Zebrafish

Michel JC, Grivette MMB, Harshfield AT, Huynh L, Loomis B, McKinnis K, Miller BT, Huang TW, Lauf S, Michel ME, Marsh AJ, Kaye LE, Lukowicz-Bedford RM, Farnsworth DR, Martin EA, Miller AC (2023). ZO1 scaffold isoforms differentially contribute to electrical synapse formation. bioRxiv 497867. Under review.

Martin EA, Michel JC, Kissinger JS, Escherverry FA, Lin YP, O’Brien J, Pereda AE, Miller AC (2023). Neurobeachin controls the asymmetric subcellular distribution of electrical synapse proteins. bioRxiv 410696. Current Biology.

Quint WH, Tadema KCD, Kokke NCCJ, Meester-Smoor M, Miller AC, Willemsen R, Klaver CCW, Iglesias AI (2023). Post-GWAS screening of candidate genes for refractive error in mutant zebrafish models. Scientific Reports.

Michel JC, Miller AC (2023). Isolation of immunocomplexes from zebrafish brain. Bio-protocol.

Michel JC, Lasseigne AM, Marsh AJ, Miller AC (2022). The disconnect2 mutation disrupts the tjp1b gene that is required for electrical synapse formation. bioRxiv 497839. microPublication Biology.

Ncube D, Tallafuss A, Serafin J, Bruckner J, Farnsworth DR, Miller AC, Eisen JS, Washbourne P (2022). A conserved transcriptional fingerprint of multi-neurotransmitter neurons necessary for social behavior. BMC Genomics.

Bearce EA, Irons ZH, Craig SB, Kuhns CJ, Sabazali C, Farnsworth DR, Miller AC, Grimes DT (2022). Daw1 regulates the timely onset of cilia motility during development. Development, 149(12):dev200017. DOI:10.1242/dev.200017. PMC9270974.

Lukowicz-Bedford RM, Farnsworth DR, Miller AC (2022). Connexinplexity: the spatial and temporal expression of connexin genes during vertebrate organogenesis. bioRxiv 410696. G3: Genes, Genomes, Genetics.

Lasseigne AM, Echeverry FA, Ijaz S, Michel JC, Martin EA, Marsh AJ, Trujillo E, Marsden KC, Pereda AE, Miller AC (2020). Electrical synaptic transmission requires a postsynaptic scaffolding proteins. eLife.

Quint WH, Tadema KCD, Vrieze E, Lukowicz RM, Broekman S, Winkelman BHJ, Hoevenaars M, Gruiter M, Wijk E, Schaeffel F, Meester-Smoor M, Miller AC, Willemsen R, Klaver CCW, Iglesias AI (2021). Loss of Gap Junction Delta-2 (GJD2) gene orthologs leads to refractive error in zebrafish. Communications Biology.

Farnsworth DR, Posner M, Miller AC (2021). Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Experimental Eye Research.

Postlethwait J, Massaquoi MS, Farnsworth DR#, Yan YL, Guillemin K, Miller AC (2021). The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Biology Open.

Loes AN, Hinman MN, Farnsworth DR#, Miller AC, Guillemin K, Harms, MJ (2021). Identification and characterization of zebrafish Tlr4 co-receptor Md-2. Journal of Immunology.

Yan YL, Titus T, Desvignes T, Bremiller R, Batzel P, Sydes J, Farnsworth DR#, Dillon D, Wegner J, Phillips JB, Peirce J, Dowd J, Undiagnosed Diseases Network, Buck CL, Miller AC, Westerfield M, Postlethwait JH (2021). A fish with no sex: gonadal and adrenal functions partition between zebrafish NR5A1 co-orthologs. Genetics.

Martin EA, Lasseigne AM, Miller AC (2020). Understanding the molecular and cell biological mechanisms of electrical synapse formation. Frontiers in Neuroanatomy.

Farnsworth DR, Saunders LM, Miller AC (2020). A single-cell transcriptome atlas for zebrafish development. Developmental Biology.
Martin EA. Cover illustration for the Farnsworth et al paper. Developmental Biology.

Bremer J, Marsden K, Miller AC, Granato M (2019). The ubiqutin ligase PHR promotes directional regrowth of spinal zebrafish axons. Communications Biology.

Loes AN, Hinman MN, Farnsworth DR, Miller AC, Guillemin K, Harms, MJ (2019). Identification and characterization of zebrafish Tlr4 co-receptor Md-2. Journal of Immunology.

Marsh AJ, Michel JC, Adke AP, Heckman EL, Miller AC (2017). Asymmetry of an intracellular scaffold at vertebrate electrical synpases. Current Biology.
    - Featured in Dispatch by Nagy and Rash. Current Biology.

Miller AC, Whitebirch AC, Shah AN, Marsden KC, Granato M, O'Brien J, Moens CB (2017). A genetic basis for molecular asymmetry at vertebrate electrical synapses. eLife.

Miller AC, Pereda AE (2017). The electrical synapse - molecular complexities at the gap and beyond. Developmental Neurobiology.

Shah AN, Moens CB, Miller AC (2016). Targeted candidate gene screens using CRISPR/Cas9 technology. Methods in Cell Biology.

Shah AN, Davey CF, Whitebirch AC, Miller, AC^, Moens CB^ (2015). Reverse genetic screening using CRISPRs in zebrafish. Nature Methods. ^ denotes co-senior authorship
    - "Technofish" primer on the paper: Shah AN, Davey CF, Whitebirch AC, Moens CB^, Miller, AC^ (2015). Reverse genetic screening using CRISPRs in zebrafish. Zebrafish.

Miller AC, Voelker L, Shah AN, Moens CB (2015). Neurobeachin is required autonomously by the postsynaptic for electrical and chemical synapse formation. Current Biology.
  - Featured in Dispatch by Pereda A. Current Biology.

Miller AC, Obholzer ND, Shah AN, Megason SG, Moens CB (2013). RNA-seq based mapping and candidate identification of mutations from forward genetic screens. Genome Research.
  - Highlighted by Burgess D. Nature Reviews Genetics.

Songco-Casey JO, Coffing GC, Piscopo DM, Pungor JR, Kern AD, Miller AC, Niell CM (2022). Cell types and molecular architecture of the Octopus bimaculoides visual system. bioRxiv 495763. Current Biology.

Drosophila

Miller AC, Urban E, Lyons EL, Herman TG, Johnston RJ (2021). Interdependent regulation of stereotyped and stochastic photoreceptor fates in the fly eye. Developmental Biology 471(89-96).

Finley JK, Miller AC, Herman TG (2015). Polycomb group genes are required to maintain a binary fate choice in the Drosophila eye. Neural Development 10(1):2.

Miller AC, Lyons E, Herman TG (2009). cis-inhibition of Notch by endogenous Delta biases the outcome of lateral inhibition. Current Biology 19(16), 1378-83.
  - Featured in Dispatch by  del Alamo D and Schwisguth F. Current Biology 19(16):F683-4.
  - Selected for cover illustration.

Miller AC, Seymour H, King C, Herman TG (2008). Loss of seven-up from Drosophila R1/R6 photoreceptors reveals a stochastic fate choice that is normally biased by Notch. Development 135(4), 707-15.

C. elegans

Faumont S, Miller AC, and Lockery SR (2005). Chemosensory behavior of semi-restrained Caenorhabditis elegans. Journal of Neurobiology 65(2), 171-8.

Miller AC*, Thiele TR*, Faumont S*, and Lockery SR (2005). Step-response analysis of chemotaxis in Caenorhabditis elegans. Journal of Neuroscience 25(13), 3369-78.

Zariwala HA*, Miller AC*, Faumont S*, and Lockery SR (2003). Step response analysis of thermotaxis in Caenorhabditis elegans. Journal of Neuroscience 23(10), 4369-4377.

* denotes co-first authorship